Code

 
 
 
 
 
 
 
 
 
 

Murthy Lab Github:

Includes: 

Murthy Lab FlySongSegmenterhttps://github.com/murthylab/MurthyLab_FlySongSegmenter

Code to combine signals from multiple microphones, and to segment courtship song into its three modes (sine, Pfast, and Pslow)

Pulse Type Classificationhttps://github.com/murthylab/pulseTypePipeline

see Clemens et al. Current Biology 2018; code to separate courtship song pulses into Pfast and Pslow

no IPI cycleshttps://github.com/murthylab/noIPIcycles

code and data from Stern et al. PNAS 2017

Drosophila virilis song analysishttps://github.com/murthylab/GLMvirilis and https://github.com/murthylab/virilisSongSegmente

code for analyzing data in LaRue et al. eLife 2015

LEAP (LEAP Estimates Animal Pose)https://github.com/murthylab/leap

code for tracking animal body parts via deep learning: see Pereira*, Aldarondo* et al. bioRxiv 2018 (Nature Methods in press)

Python Ball Motion Tracking (pybmt): https://github.com/murthylab/pybmt

python code for tracking ball motion during head-fixed fly-on-the-ball experiments and delivering stimuli in closed-loop with ball motion - this is a python interface for running and using Richard Moore’s FicTrac (https://github.com/rjdmoore/fictrac)